物种缩写

正如“VectorBuilder载体是如何命名的?”文中所讲,在使用VectorBuilder提供的ORF数据库设计载体后,载体名称中的基因名称亦会被赋予一个物种缩写(Species abbreviations)进行区分。物种缩写如下表所示:

常见物种
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
HumanHomo sapiens9606h
MouseMus musculus10090m
RatRattus norvegicus10116r
哺乳动物(Mammals)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
AlpacaVicugna pacos30538vpa_
ArmadilloDasypus novemcinctus9361dno_
BushbabyOtolemur garnettii30611oga_
CatFelis catus9685ct
ChimpanzeePan troglodytes9598ch
CowBos taurus9913cw
DogCanis lupus familiaris9615dg
DolphinTursiops truncatus9739ttr_
ElephantLoxodonta africana9785laf_
FerretMustela putorius furo9669mpu_
GibbonNomascus leucogenys61853gi
GorillaGorilla gorilla gorilla9595go
Guinea pigCavia porcellus10141cpo_
HedgehogErinaceus europaeus9365eeu_
HorseEquus caballus9796ho
HyraxProcavia capensis9813pca_
Kangaroo ratDipodomys ordii10020dor_
Lesser hedgehog tenrecEchinops telfairi9371ete_
MacaqueMacaca mulatta9544ma
MarmosetCallithrix jacchus9483cja_
MegabatPteropus vampyrus132908pva_
MicrobatMyotis lucifugus59463mlu_
Mouse lemurMicrocebus murinus30608mmu_
Olive baboonPapio anubis9555pan_
OpossumMonodelphis domestica13616mdo_
OrangutanPongo abelii9601or
PandaAiluropoda melanoleuca9646pd
PigSus scrofa9823pg
PikaOchotona princeps9978opr_
RabbitOryctolagus cuniculus9986ra
PlatypusOrnithorhynchus anatinus9258oan_
SheepOvis aries9940sh
ShrewSorex araneus42254sar_
SlothCholoepus hoffmanni9358cho_
SquirrelIctidomys tridecemlineatus43179sq
Tasmanian devilSarcophilus harrisii9305sha_
Tree shrewTupaia belangeri37347tbe_
 Green monkeyChlorocebus sabaeus60711ve
WallabyMacropus eugenii9315meu_
鸟类(Birds)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
ChickenGallus gallus9031gga_
DuckAnas platyrhynchos8839apl_
FlycatcherFicedula albicollis59894fal_
TurkeyMeleagris gallopavo9103mga_
Zebra finchTaeniopygia guttata59729tgu_
爬行动物(Reptiles)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
Anole lizardAnolis carolinensis28377aca_
Chinese softshell turtlePelodiscus sinensis13735psi_
Amazon mollyPoecilia formosa48698pfo_
两栖动物(Amphibians)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
Western clawed frogXenopus tropicalis8364xtr_
鱼类(Fish)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
Cave fishAstyanax mexicanus7994ame_
CodGadus morhua8049gmo_
CoelacanthLatimeria chalumnae7897lch_
FuguTakifugu rubripes31033tru_
LampreyPetromyzon marinus7757pma_
MedakaOryzias latipes8090ola_
PlatyfishXiphophorus maculatus8083xma_
Spotted garLepisosteus oculatus7918loc_
SticklebackGasterosteus aculeatus69293gac_
TetraodonTetraodon nigroviridis99883tni_
TilapiaOreochromis niloticus8128oni_
ZebrafishDanio rerio7955dre_
被囊动物(Tunicates)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
Solitary sea squirtCiona savignyi51511csa_
Vase tunicateCiona intestinalis7719cin_
昆虫(Insects)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
FruitflyDrosophila melanogaster7227dme_
植物(Plants)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
RiceOryza sativa4530osa_
Thale cressArabidopsis thaliana3702ath_
酵母(Yeast)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
Baker's yeastSaccharomyces cerevisiae4932sce_
Fission yeastSchizosaccharomyces pombe4896spo_
细菌(Bacteria)
常用名称(Common name)科学名称(Scientific name)Taxonomy IDVectorBuilder物种缩写
BacillusBacillus subtilis1423bsu_
E.coliEscherichia coli562eco_
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