物种缩写
正如“VectorBuilder载体是如何命名的?”文中所讲,在使用VectorBuilder提供的ORF数据库设计载体后,载体名称中的基因名称亦会被赋予一个物种缩写(Species abbreviations)进行区分。物种缩写如下表所示:
常见物种
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Human | Homo sapiens | 9606 | h |
Mouse | Mus musculus | 10090 | m |
Rat | Rattus norvegicus | 10116 | r |
哺乳动物(Mammals)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Alpaca | Vicugna pacos | 30538 | vpa_ |
Armadillo | Dasypus novemcinctus | 9361 | dno_ |
Bushbaby | Otolemur garnettii | 30611 | oga_ |
Cat | Felis catus | 9685 | ct |
Chimpanzee | Pan troglodytes | 9598 | ch |
Cow | Bos taurus | 9913 | cw |
Dog | Canis lupus familiaris | 9615 | dg |
Dolphin | Tursiops truncatus | 9739 | ttr_ |
Elephant | Loxodonta africana | 9785 | laf_ |
Ferret | Mustela putorius furo | 9669 | mpu_ |
Gibbon | Nomascus leucogenys | 61853 | gi |
Gorilla | Gorilla gorilla gorilla | 9595 | go |
Guinea pig | Cavia porcellus | 10141 | cpo_ |
Hedgehog | Erinaceus europaeus | 9365 | eeu_ |
Horse | Equus caballus | 9796 | ho |
Hyrax | Procavia capensis | 9813 | pca_ |
Kangaroo rat | Dipodomys ordii | 10020 | dor_ |
Lesser hedgehog tenrec | Echinops telfairi | 9371 | ete_ |
Macaque | Macaca mulatta | 9544 | ma |
Marmoset | Callithrix jacchus | 9483 | cja_ |
Megabat | Pteropus vampyrus | 132908 | pva_ |
Microbat | Myotis lucifugus | 59463 | mlu_ |
Mouse lemur | Microcebus murinus | 30608 | mmu_ |
Olive baboon | Papio anubis | 9555 | pan_ |
Opossum | Monodelphis domestica | 13616 | mdo_ |
Orangutan | Pongo abelii | 9601 | or |
Panda | Ailuropoda melanoleuca | 9646 | pd |
Pig | Sus scrofa | 9823 | pg |
Pika | Ochotona princeps | 9978 | opr_ |
Rabbit | Oryctolagus cuniculus | 9986 | ra |
Platypus | Ornithorhynchus anatinus | 9258 | oan_ |
Sheep | Ovis aries | 9940 | sh |
Shrew | Sorex araneus | 42254 | sar_ |
Sloth | Choloepus hoffmanni | 9358 | cho_ |
Squirrel | Ictidomys tridecemlineatus | 43179 | sq |
Tasmanian devil | Sarcophilus harrisii | 9305 | sha_ |
Tree shrew | Tupaia belangeri | 37347 | tbe_ |
Green monkey | Chlorocebus sabaeus | 60711 | ve |
Wallaby | Macropus eugenii | 9315 | meu_ |
鸟类(Birds)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Chicken | Gallus gallus | 9031 | gga_ |
Duck | Anas platyrhynchos | 8839 | apl_ |
Flycatcher | Ficedula albicollis | 59894 | fal_ |
Turkey | Meleagris gallopavo | 9103 | mga_ |
Zebra finch | Taeniopygia guttata | 59729 | tgu_ |
爬行动物(Reptiles)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Anole lizard | Anolis carolinensis | 28377 | aca_ |
Chinese softshell turtle | Pelodiscus sinensis | 13735 | psi_ |
Amazon molly | Poecilia formosa | 48698 | pfo_ |
两栖动物(Amphibians)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Western clawed frog | Xenopus tropicalis | 8364 | xtr_ |
鱼类(Fish)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Cave fish | Astyanax mexicanus | 7994 | ame_ |
Cod | Gadus morhua | 8049 | gmo_ |
Coelacanth | Latimeria chalumnae | 7897 | lch_ |
Fugu | Takifugu rubripes | 31033 | tru_ |
Lamprey | Petromyzon marinus | 7757 | pma_ |
Medaka | Oryzias latipes | 8090 | ola_ |
Platyfish | Xiphophorus maculatus | 8083 | xma_ |
Spotted gar | Lepisosteus oculatus | 7918 | loc_ |
Stickleback | Gasterosteus aculeatus | 69293 | gac_ |
Tetraodon | Tetraodon nigroviridis | 99883 | tni_ |
Tilapia | Oreochromis niloticus | 8128 | oni_ |
Zebrafish | Danio rerio | 7955 | dre_ |
被囊动物(Tunicates)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Solitary sea squirt | Ciona savignyi | 51511 | csa_ |
Vase tunicate | Ciona intestinalis | 7719 | cin_ |
昆虫(Insects)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Fruitfly | Drosophila melanogaster | 7227 | dme_ |
植物(Plants)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Rice | Oryza sativa | 4530 | osa_ |
Thale cress | Arabidopsis thaliana | 3702 | ath_ |
酵母(Yeast)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Baker's yeast | Saccharomyces cerevisiae | 4932 | sce_ |
Fission yeast | Schizosaccharomyces pombe | 4896 | spo_ |
细菌(Bacteria)
常用名称(Common name) | 科学名称(Scientific name) | Taxonomy ID | VectorBuilder物种缩写 |
Bacillus | Bacillus subtilis | 1423 | bsu_ |
E.coli | Escherichia coli | 562 | eco_ |